Index A | B | C | D | E | F | G | I | J | K | L | M | N | P | R | S | V | W A add_param() (MATTE.AlignPipe method) add_params() (MATTE.PipeFunc method) add_step() (MATTE.AlignPipe method) add_transformer() (MATTE.AlignPipe method) affinity_matrix() (in module MATTE.utils) AlignPipe (class in MATTE) B build_from_func() (MATTE.cluster.CrossCluster method) build_from_model() (MATTE.cluster.CrossCluster method) build_results() (in module MATTE.cluster) C calculate() (MATTE.AlignPipe method) calculate_from_temp() (MATTE.AlignPipe method) cluster_properties (MATTE.analysis.ClusterResult attribute) ClusterResult (class in MATTE.analysis) CorrKernel_Transform() (in module MATTE.preprocess) Cross_Distance() (in module MATTE.cluster) CrossCluster (class in MATTE.cluster) D df_exp (MATTE.analysis.ClusterResult attribute) df_pheno (MATTE.analysis.ClusterResult attribute) E expr_filter() (in module MATTE.preprocess) F Fig_Fuction() (in module MATTE.analysis) Fig_SampleFeature() (in module MATTE.analysis) find_best_KernelTrans_params() (MATTE.AlignPipe method) FunctionEnrich() (in module MATTE.analysis) G gene_rank() (MATTE.GeneRanker method) gene_rank_dist() (MATTE.GeneRanker method) gene_rank_module() (MATTE.GeneRanker method) GeneRanker (class in MATTE) GeneSNR() (MATTE.analysis.ClusterResult method) get_attribute_from_transformer() (MATTE.AlignPipe method) I init_pipeline() (MATTE.AlignPipe method) inputs_check() (in module MATTE.preprocess) J JM (MATTE.analysis.ClusterResult attribute) K kw_decorator() (in module MATTE.utils) L label (MATTE.analysis.ClusterResult attribute) LocKernel_Transform() (in module MATTE.preprocess) log2transform() (in module MATTE.preprocess) M MATTE module MATTE.analysis module MATTE.cluster module MATTE.preprocess module MATTE.utils module MCCorrFeature() (MATTE.analysis.ClusterResult method) MCFeature() (MATTE.analysis.ClusterResult method) MCkwtest() (MATTE.analysis.ClusterResult method) merged_pipeline_clustering() (in module MATTE) module MATTE MATTE.analysis MATTE.cluster MATTE.preprocess MATTE.utils module_genes (MATTE.analysis.ClusterResult attribute) ModuleSNR() (MATTE.analysis.ClusterResult method) N n_cluster (MATTE.analysis.ClusterResult attribute) normalization() (in module MATTE.preprocess) P PhenoMCCorr() (MATTE.analysis.ClusterResult method) PipeFunc (class in MATTE) pipeline_clustering() (MATTE.GeneRanker method) preset() (MATTE.cluster.CrossCluster method) preset_kmeans() (MATTE.cluster.CrossCluster method) preset_spectral_bicluster() (MATTE.cluster.CrossCluster method) preset_spectrum() (MATTE.cluster.CrossCluster method) printv() (in module MATTE.utils) R RDC_Transform() (in module MATTE.preprocess) RDE_Transform() (in module MATTE.preprocess) res (MATTE.analysis.ClusterResult attribute) RPKM2TPM() (in module MATTE.preprocess) S SampleFeature() (MATTE.analysis.ClusterResult method) save() (MATTE.GeneRanker method) set_cluster_method() (MATTE.AlignPipe method) summary() (MATTE.analysis.ClusterResult method) V Vis_Jmat() (MATTE.analysis.ClusterResult method) W weight_distance() (MATTE.analysis.WeightedDataFrame method) WeightedDataFrame (class in MATTE.analysis)